HsaEX6062791 @ hg19
Exon Skipping
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:24566]
Coordinates
chr9:123628306-123630634:-
Coord C1 exon
chr9:123630538-123630634
Coord A exon
chr9:123629148-123629243
Coord C2 exon
chr9:123628306-123628374
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCTCTGTCTCTCCAGATG
3' ss Score
11.22
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
AAAAAAAATGTGAGCTGTTACTGGTGGTAGTGGTGGTACTAATGCATGAAAGTCAAGATAACCTTTTCACAGTCAGAGTCAGTGGAACCGGCTGCTG
Seq A exon
ATGGTACCTGCGGATGCTGCAATGTTACCGGTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGCCTCAATGAGCCCATGATGTTTGGAGACCG
Seq C2 exon
GTTTTACCTGTTCTTCTGCTCCGTGTGTAACCAGGGCCCAGAGTACATCGAGAGGCTGCCCCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-'14-18,'14-15,15-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0062824=PHD=PU(67.5=96.4)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGAGCTGTTACTGGTGGT
R:
GGCAGCCTCTCGATGTACTCT
Band lengths:
151-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)