BtaEX0027049 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:507927-509945:+
Coord C1 exon
chr25:507927-508007
Coord A exon
chr25:508488-508602
Coord C2 exon
chr25:509884-509945
Length
115 bp
Sequences
Splice sites
3' ss Seq
GAGCACTGTCTGTGCTGCAGCTC
3' ss Score
5.65
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
CTGTTCATCGGGACCTTGCTCTTCACCATCCTGATTTTCCTGCTTCCTACCACGGCCCTGTACTACCTGGTGTTCACCCTG
Seq A exon
CTCCGGCTCCTAGTGGTCACCGTGCAGGGCCTGGTCCATCTGCTCGTGGACCTCATCAACTCGCTGCCGCTGTACTCGCTTGGCCTCCGGCTGTGCCGGCCCTACAGGCTTGCGG
Seq C2 exon
CCGGCGTGAAGTTCCGGGTCCTGGAGCACGAGGCTGGCCGGCCCCTGCGCCTCCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.321 C2=0.512
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(10.8=63.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGGACCTTGCTCTTCAC
R:
CTGCATCAGGAGGCGCAG
Band lengths:
138-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development