GgaEX0002430 @ galGal4
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13511557-13521729:+
Coord C1 exon
chr14:13511557-13511710
Coord A exon
chr14:13517539-13517653
Coord C2 exon
chr14:13521668-13521729
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACTGAACTGTTTCTCGTTAGCTC
3' ss Score
5.01
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
Seq A exon
CTCCGTTTGCTGGTGGTGATTGTGCAAGGCCTGATCCACTTGCTGGTTGACCTGATTGACTCTCTGCCCCTTTATTCAATCATCCTTCGGTTCTGCAGATCCTACAGGCTGGCAG
Seq C2 exon
CTGGTGTGAAGTTCAGAGTCCTCGAGCAGCAGGATGGAAAACCTCTTCGACTCCTTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATTCACCTGATGTCCCC
R:
CTGCATAAGGAGTCGAAGAGGT
Band lengths:
216-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]