DreEX0055479 @ danRer10
Exon Skipping
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26662856-26667733:-
Coord C1 exon
chr3:26667653-26667733
Coord A exon
chr3:26664444-26664558
Coord C2 exon
chr3:26662856-26662917
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTGTGTGCTTGTAGCTG
3' ss Score
8.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGTTCATAGGGACTTTGCTCTTTACAATTCTGCTGTTCCTGCTGCCCACCACTGCCCTCTATTACCTGGTCTTTACCCTG
Seq A exon
CTGCGGCTGGTGGTGGTTCTGTTTCAGGGAGTGATTCACCTCAGTGTCGACTTCATCAACTCTTTCCCCCTGTTTGCCATCGGCCTGCGCATCTGCAGACCATACAGACTGGCAG
Seq C2 exon
AGGGTGTTAAATTCAAAGTGCTTTGTGAGGAGTCAGGATCTCCGCTTCACCTGATGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097-'10-11,'10-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(8.9=63.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATAGGGACTTTGCTCTT
R:
CCATCATCAGGTGAAGCGGAG
Band lengths:
140-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]