MmuEX6076127 @ mm10
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25928791-25931038:-
Coord C1 exon
chr17:25930958-25931038
Coord A exon
chr17:25930521-25930635
Coord C2 exon
chr17:25928791-25928852
Length
115 bp
Sequences
Splice sites
3' ss Seq
GAATGTCACCTTTGCTACAGCTC
3' ss Score
5.44
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
Seq A exon
CTCCGGCTCCTGGTGATCACTGTGCAAGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
Seq C2 exon
CTGGTGTGAAGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGACCCCTCCGCCTCCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.084
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(10.8=63.0)
A:
PF0502410=Gpi1=PD(36.7=46.2)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGGGACCTTGCTCTTCAC
R:
CTGCATCAGGAGGCGGAGG
Band lengths:
139-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types