HsaEX6041377 @ hg19
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:630183-632309:+
Coord C1 exon
chr16:630183-630263
Coord A exon
chr16:630858-630972
Coord C2 exon
chr16:632248-632309
Length
115 bp
Sequences
Splice sites
3' ss Seq
TAAATGCTCCTCTGCCACAGCTC
3' ss Score
6.43
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CTGTTCATCGGGACTCTGCTCTTCACCATCCTGCTCTTCCTCCTGCCTACCACAGCCCTGTACTACCTGGTGTTCACCCTG
Seq A exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
Seq C2 exon
CTGGCGTGAAGTTCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTCCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-'19-22,'19-19,20-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(12.8=64.3)
A:
PF0502410=Gpi1=PD(35.4=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATCGGGACTCTGCTCT
R:
CTGCATCAGGAGGCGGAGG
Band lengths:
142-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)