DmeEX6002801 @ dm6

Exon Skipping

Gene

Description

The gene Phosphatidylinositol glycan anchor biosynthesis class Q is referred to in FlyBase by the symbol DmelPIG-Q (CG32578, FBgn0086448). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:16359143..16361275. Its molecular function is described by: phosphatidylinositol N-acetylglucosaminyltransferase activity. It is involved in the biological process described with: GPI anchor biosynthetic process. 15 alleles are reported. The phenotype of these alleles manifest in: polytene chromosome. The phenotypic classes of alleles include: some die during larval stage; lethal; wild-type; lethal - all die before end of larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages.

Coordinates

chrX:16360763-16361275:+

Coord C1 exon

chrX:16360763-16360878

Coord A exon

chrX:16360932-16361046

Coord C2 exon

chrX:16361114-16361275

Length

115 bp

Sequences

Splice sites

3' ss Seq

TAATACAACTTTCTTTATAGCTG

3' ss Score

6.65

5' ss Seq

TAGGTAATT

5' ss Score

7.27

Exon sequences

Seq C1 exon

GTCGCACTGAGTCCCACAACTATATGAATCGGCAATTATATCTAGCTACCATATTTTTCTCGGCTATTCTGTTTTTGTTACCCACTACCCTTGTCTACTATATAGTTTTTGCTGCT

Seq A exon

CTGAAGGCGCTCACATTTGCTACTCTAAGTGTCTTTCATTTTTTGCGAAGAAAACTGATGTATCTCCCGATTGAAGTCTGTATAAAACGGTTATTAAGAGGATGTCATGAAATAG

Seq C2 exon

ATTGTATTCAAATCAAAGATGTTTCACATCACGAAAGGGCTTTCCTGATGCACAAACAACAGAAAATCAACGTGACAGTGTATAAAATTACAACTTTATAATCCTTGCCATATATGTAGAATATATTTAGAAGTAAACATAACATGTTTTAAAAGTACATTT

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0086448-'5-8,'5-7,6-8=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features