BtaEX0027091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35867460-35886278:+
Coord C1 exon
chr15:35867460-35868530
Coord A exon
chr15:35881166-35881269
Coord C2 exon
chr15:35886121-35886278
Length
104 bp
Sequences
Splice sites
3' ss Seq
AAAAATTTTTTTCATTACAGAAA
3' ss Score
7.14
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CAGGACAGTCTCCATATTTTTCATATCCTTTGACACCTGCCACACCCTTTCATCCACAAGGAAGCTTACCTATCTATCGCCCAGTCATCAGTCCTGACATGGCAAAGCTGTTTGACAAAATAGCTAGCACATCAGAATTTTTAAAAAATGGAAAAGCAAGGACTGATTTGGAGATAAATTCAAAAACTACAATCAGCAATCTGCAGGTATCTCCAAAGTCTGAAGATATCAGTAAATTTGATTGGTTAGACTTGGATCCTCTAAGTAAGCCTAAGGTGGACAATGTAGAGGTAGAGGACCATGAGGAAGAGAAAAATGTACCAGATTTGCTAGCAGACGATCCCTGGGATGCTGTTCTTCTTGAGGAGAGATCACCAGCAAGTTGTCACCTTGACAGAAAGGTGAATGGAAAATCTCTTTCTGGAGCAACAGTAACAAGAAGCCAGTCTTTAAATATTCGAACAACTCAGCCTACAAAAGTCCAGAGCCAAATATATCAG
Seq A exon
AAAGACCCAAATGGGACCAGTACTTTGCCAACTGAAAGTTCTCTTCTACAAGAAATTGAAGTACAGAATGAGGAAGTAGCAGCTTTTTGTCAATCCATTACAAA
Seq C2 exon
ATTGAAGACCAACTTTCCATATACCAATCACTGTACAAATCGGGGCTATTTGTTAAGTCCAGTCACAGTACAAAGAAACATATGTGGAGAAAATGCTAGCGTGAAGGTCTCCATTGAAATTGAAGGATTTCAGCTACCAGTTACCTTCACATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.7=63.0)
Main Skipping Isoform:
ENSBTAT00000046627fB5237
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGCAAGTTGTCACCTT
R:
TGGAGACCTTCACGCTAGCAT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development