RnoEX0065936 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185233419-185261263:+
Coord C1 exon
chr1:185233419-185234547
Coord A exon
chr1:185252579-185252682
Coord C2 exon
chr1:185261106-185261263
Length
104 bp
Sequences
Splice sites
3' ss Seq
AACCACTTTTTTGATTACAGAAA
3' ss Score
5.31
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GACAGTCTCCATATTTTTCATATCCTTTGACACCTGCCACACCATTTCATCCACAAGGAAGTTTACCAGTCTATCGGCCACTAGTCAGTCCTGACATGGCAAAACTATTTGACAAAATAGCAAGTACCTCAGAATTTTTAAAAAATGGGAAAGCAAGGACTGATTTGGAGATAGCAAACTCGAAAGCTTCAGTCTGCAATCTACAAATATCTCCAAAGTCTGAAGACATCAATAAATTTGATTGGTTGGACTTGGATCCTCTGAGTAAGCCTAAGATAGACTGTGTGGAAGTGTTAGAACATGAAGAAGAGAAGAAGAATCCAGTTTTGCTAGCAGAGGATCCTTGGGATGCTGTTCTTCTTGAAGAGAGATCACCAACAAGTCGTCACCTAGAAAGGAAGGTGAATGGAAAATCCCTTTCTGGGGCGACTGTAACAAGAAGCCAGTCTTTAATCGTTCGGACAACTCAAGTTACAAAAGCCCAGAGCCAGGTATCTCAG
Seq A exon
AAAGACCCAAATGGGACCAGTAGTTTGGCAACTGGAAGTTCTCTTCTACAAGAATTTGAAGTACAGAATGAGGAGGTGGCAGCTTTTTGTCAATCCATTATGAA
Seq C2 exon
ATTAAAGACCAAATTTCCATATACCGATCACTGTACAAATCCAGGCTATTTGTTAAGTCCAGTCACAGTGCAAAGAAACATGTGTGGGGAAAATGCCAGTGTGAAGGTCTCCATTGAAATTGAAGGGTTTCAACAACCAGTTACTTTTACATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=0.257 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.7=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGCAGAGGATCCTTGGGA
R:
TCTTTGCACTGTGACTGGACT
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]