GgaEX0008669 @ galGal4
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11169405-11178024:-
Coord C1 exon
chr5:11176851-11178024
Coord A exon
chr5:11171190-11171290
Coord C2 exon
chr5:11169405-11169562
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTATTATCTTTGAGTTGCAGAAA
3' ss Score
2.27
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AGTCGCAATACATTTCATATCCACTGGCAGCTACTACACCTTTCCATCCACAAGGAAGCCTACCTATATATCCTCCAGTACTTACACCAGAATTGGCAAAAGTATTTGACAAAATTGCAAGCACCTCAGAATTTCTGAGAAATGGGAAGTCAAGCACAGACTTAGAGATGACTGCTATAAAGTCTGCAGTTTCCAGCCTACCAGCCTCAGAAAAATGCAGAGACATCAGTAAATTTGACTGGTTAGATTTGGATCCCCTCAGTAAACCAAAAGTGGATAGTGTGGAGACTTTGTATAAGGCAGAGGATCGTGGAGAGATGGCATCAGGTATGACAGCTGAAGATCCGTGGGATGCTGTGCTGTTAAAAGAGAAGCTGTTAGTAACTTGTCATCTGGAAAGAAAAATAAATGGGAAATCTTCTGGAGCAACCGTTACGAGGAGCCAGTCCTTGAACATGCGAACAACTCAGCTTGGGAAGTTACAAGGCCAAACATCACAG
Seq A exon
AAAGACAATGGGACCACTGGCACGCTGACAGAAAATGTGCTTCTCCAAGAAATGGAAGGGCAGAATCAAGAACTGTCAGCTTTTTCTCAAGCAGTTACAAA
Seq C2 exon
ATTGAGGACCAAGTTTCCTTACACTGATCAGCAATCAAACCCAGGCTTTGTGCTGAGTCCAATCATGCTACAAAGAAATATAACTGGGGAGAGTGCCAGTATCAAGGTTTCTATAGAAATCAAGGGATTCCAGCAGCCAGTAACTTTTACATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.412 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.7=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCGTGGAGAGATGGC
R:
AAGCCTGGGTTTGATTGCTGA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]