GgaEX0008669 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12875078-12883612:-
Coord C1 exon
chr5:12882524-12883612
Coord A exon
chr5:12876863-12876963
Coord C2 exon
chr5:12875078-12875235
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTATTATCTTTGAGTTGCAGAAA
3' ss Score
2.27
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AGTCGCAATACATTTCATATCCACTGGCAGCTACTACACCTTTCCATCCACAAGGAAGCCTACCTATATATCCTCCAGTACTTACACCAGAATTGGCAAAAGTATTTGACAAAATTGCAAGCACCTCAGAATTTCTGAGAAATGGGAAGTCAAGCACAGACTTAGAGATGACTGCTATAAAGTCTGCAGTTTCCAGCCTACCAGCCTCAGAAAAATGCAGAGACATCAGTAAATTTGACTGGTTAGATTTGGATCCCCTCAGTAAACCAAAAGTGGATAGTGTGGAGACTTTGTATAAGGCAGAGGATCGTGGAGAGATGGCATCAGGTATGACAGCTGAAGATCCGTGGGATGCTGTGCTGTTAAAAGAGAAGCTGTTAGTAACTTGTCATCTGGAAAGAAAAATAAATGGGAAATCTTCTGGAGCAACCGTTACGAGGAGCCAGTCCTTGAACATGCGAACAACTCAGCTTGGGAAGTTACAAGGCCAAACATCACAG
Seq A exon
AAAGACAATGGGACCACTGGCACGCTGACAGAAAATGTGCTTCTCCAAGAAATGGAAGGGCAGAATCAAGAACTGTCAGCTTTTTCTCAAGCAGTTACAAA
Seq C2 exon
ATTGAGGACCAAGTTTCCTTACACTGATCAGCAATCAAACCCAGGCTTTGTGCTGAGTCCAATCATGCTACAAAGAAATATAACTGGGGAGAGTGCCAGTATCAAGGTTTCTATAGAAATCAAGGGATTCCAGCAGCCAGTAACTTTTACATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'0-3,'0-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.412 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(32.7=63.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCGTGGAGAGATGGC
R:
AAGCCTGGGTTTGATTGCTGA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]