DreEX0055517 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27024823-27044158:+
Coord C1 exon
chr18:27024823-27025954
Coord A exon
chr18:27039800-27039900
Coord C2 exon
chr18:27043998-27044158
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTGTCTTTTTACAGGTC
3' ss Score
11.19
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCCCCTTTCTCTCCTTTACTCCCATCCAACCACCTGCTGCTCTGGTCTACTCGCAGCCTGCCGTCACCCCAGAGATGGCCAAGCTGTTTGACAAGATTGCCAGCACTTCGGAATACTTGAAGAACGGCAGGTCCTCTAGCATGGAAACCGAATCGGCAAGTGTCAAGTCTCTGGAGCCCCTACCTCTGCCCTCAGAACCTCCTAACATCAGCCGATTTGAATGGCTGGACTTGGACCCTCTCAACAAGCGCAAGGAGGTGGAGGTCGAGGAGACACCTGCTGTTTCAAGCTGTCCTTTTATTGAGGAGTCTGGGAAAGCTAAAGACCCGTGGGATGCGGTTCTTCAGGATGAGCATGAAACTGTAGATAATGGCAGTCCCACCGCAGAGGAAAAGAGCAAGGCAACTCAACCCAGAAGAGCATCCACAGGGGCGGCTGTAACAAAAAGCCAATCCCTCAGTATATCTGCAAACTCAACGAATCAAAGCACAGGCAAACAG
Seq A exon
GTCAATAAGGGAAGCACAAATGTACTGTCCAAGTACTCTGCCTTACAGGAGAAGGAAGCCCAGAATCTAGAAGTTGTAGCATTCTGTGAAGACATTTCAAA
Seq C2 exon
ACTGAGGTCAAAGTTCCCACACGATGACCTGTCTACCAACCCTGGCTATGTTCTCAGCCCTGTGATCACGCAGAGGGATGCAGGAGGGGACAATGGGGGCAGTGTGAAAGTGTCCATTGAGATTTCTGATTCTCAACAGCCTGTAACGTTTACTTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.147 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079413=PI3K_rbd=PU(25.5=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCTAAAGACCCGTGGG
R:
CGTGATCACAGGGCTGAGAAC
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]