BtaEX0027307 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99244238-99245101:+
Coord C1 exon
chr11:99244238-99244300
Coord A exon
chr11:99244443-99244519
Coord C2 exon
chr11:99244959-99245101
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTGCCTTGCCCTCAGAGA
3' ss Score
10.01
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTTCTATCTGGCCTGTGTGGTCCTGGGGCTGCAGTTCTTACACGAGCAGAAGATCATTTACAG
Seq A exon
AGACCTTAAGTTGGATAATCTTCTCCTGGACGCCCAGGGTTTCCTGAAGATCGCGGACTTTGGGCTTTGTAAGGAAG
Seq C2 exon
GGATCGGCTTCGGGGACCGGACGAGCACCTTCTGCGGCACCCCGGAGTTTCTGGCCCCCGAGGTGCTGACTCAGGAGGCCTACACGCGGGCTGTGGACTGGTGGGGACTGGGCGTGCTGCTCTATGAGATGCTGGTGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195-'22-28,'22-26,23-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTTCTTACACGAGCA
R:
CATCTCATAGAGCAGCACGCC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development