RnoEX6016254 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8654389-8655435:+
Coord C1 exon
chr3:8654389-8654451
Coord A exon
chr3:8654557-8654633
Coord C2 exon
chr3:8655298-8655435
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTCACCTCTCCGCTACCAGGGA
3' ss Score
8.03
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTTCTACCTGGCCTGTGTGGTCCTGGGGCTGCAGTTCCTACACGAGAAGAGGATCATTTACAG
Seq A exon
GGATCTGAAATTGGATAATCTACTACTGGATGCCCAGGGCTTCCTCAAGATTGCAGACTTCGGACTATGCAAAGAAG
Seq C2 exon
GAATTGGCTTTGGTGACCGGACCAGCACTTTCTGTGGTACCCCAGAGTTCCTGGCTCCTGAGGTTTTGACTCAGGAGGCTTACACTCGGGCTGTGGACTGGTGGGGGCTCGGTGTGCTGCTCTATGAGATGTTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-'46-42,'46-41,47-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.3=100)
A:
PF0006920=Pkinase=FE(10.2=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTTCCTACACGAGAA
R:
CATCTCATAGAGCAGCACACCG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]