GgaEX6015105 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5860619-5861602:+
Coord C1 exon
chr17:5860619-5860681
Coord A exon
chr17:5860848-5860924
Coord C2 exon
chr17:5861460-5861602
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTTCTTTGCCTACAGGGA
3' ss Score
11.93
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTTTACACAGCCTGCGTAATCTTGGGACTCCAATTTCTGCATGAGAAGAAAATTATTTATAG
Seq A exon
GGACCTGAAATTGGATAATCTGCTTTTAGATGCTGAAGGATTTGTGAAGATTGCAGATTTTGGACTGTGTAAGGAAG
Seq C2 exon
GAATAGGTTTTGGAGACCGCACAAACACCTTCTGCGGCACTCCCGAATTTCTGGCTCCGGAAGTCCTCACAGACATCTCATACACTCGGGCAGTAGACTGGTGGGGACTGGGTGTACTCATCTATGAGATGCTTGTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCCTGCGTAATCTTGG
R:
GATGAGTACACCCAGTCCCCA
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]