GgaEX6015105 @ galGal4
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5233088-5234071:+
Coord C1 exon
chr17:5233088-5233150
Coord A exon
chr17:5233317-5233393
Coord C2 exon
chr17:5233929-5234071
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTTCTTTGCCTACAGGGA
3' ss Score
11.93
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTTTACACAGCCTGCGTAATCTTGGGACTCCAATTTCTGCATGAGAAGAAAATTATTTATAG
Seq A exon
GGACCTGAAATTGGATAATCTGCTTTTAGATGCTGAAGGATTTGTGAAGATTGCAGATTTTGGACTGTGTAAGGAAG
Seq C2 exon
GAATAGGTTTTGGAGACCGCACAAACACCTTCTGCGGCACTCCCGAATTTCTGGCTCCGGAAGTCCTCACAGACATCTCATACACTCGGGCAGTAGACTGGTGGGGACTGGGTGTACTCATCTATGAGATGCTTGTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689-'30-36,'30-35,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCCTGCGTAATCTTGG
R:
GATGAGTACACCCAGTCCCCA
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]