MmuEX0035436 @ mm10
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30088520-30089981:+
Coord C1 exon
chr2:30088520-30088582
Coord A exon
chr2:30088696-30088772
Coord C2 exon
chr2:30089839-30089981
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTCATCACTCCACCATCAGGGA
3' ss Score
6.04
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTTCTACCTGGCCTGTGTGGTTCTGGGGCTGCAGTTCCTACACGAGAAGAGGATCATTTACAG
Seq A exon
GGATCTGAAATTGGATAATCTGCTACTGGATGCCCAGGGTTTCCTCAAGATTGCAGACTTTGGACTATGCAAGGAAG
Seq C2 exon
GAATTGGCTTTGGTGACCGGACCAGCACGTTCTGTGGCACCCCGGAGTTCCTGGCCCCCGAGGTTTTGACTCAGGAGGCTTACACGCGTGCTGTGGACTGGTGGGGGCTGGGTGTGCTGCTCTATGAGATGTTAGTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGGCTGCAGTTCCTAC
R:
TCTCATAGAGCAGCACACCCA
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types