DreEX6011642 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31232323-31233895:-
Coord C1 exon
chr5:31233833-31233895
Coord A exon
chr5:31232540-31232616
Coord C2 exon
chr5:31232323-31232465
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTACTCTTTCCTCATTTTAGGGA
3' ss Score
11.78
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTTTTATTCTGCTTGTGTATTACTGGGCCTGGAGTTTCTGCACCAAAACCGGATTGTCTATAG
Seq A exon
GGATCTTAAGCTGGATAATCTGTTAATGGACTCTGATGGCTTTGTGAGAATTGCAGATTTTGGACTTTGCAAAGAAG
Seq C2 exon
GTATGGGATATGGAGATCGTACATCAACCTTTTGTGGCACCCCAGAGTTTCTGGCTCCAGAGGTTTTGACAGACAGCAATTACACCCGTGCAGTGGACTGGTGGGGTCTGGGTGTGCTCATCTATGAGATGCTCGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGGCCTGGAGTTTCTGC
R:
TAGATGAGCACACCCAGACCC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]