BtaEX0027308 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99236372-99240314:+
Coord C1 exon
chr11:99236372-99236499
Coord A exon
chr11:99237520-99237703
Coord C2 exon
chr11:99240168-99240314
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTATGCCTCCTGCAGGCT
3' ss Score
8.54
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCCTGAGCTGATGGTAGAGGAGCTACGGCACCGTCTACGCATCGAGGCTGCTGTGGCCGAGGGTGCCAAGAACGTGGTGAAGCTGCTCGGTAGCCGGCGAACGCAGGACCGCAAGGTGCTGGCCGAG
Seq A exon
GCTCAGGCCCAGCTCCAGGAGTCCTGCCAGAAACTGGACCTCCTGCGGCTGGCCTTGGAGCAGCTGCTGGAGAGACTGCCTCCTGCCCACCCTCTGCGCGGCAGAGTGGCCCGGGAGCTGCGGACTGCTGCGTCTGGGAACCCACAGCCTTCAGGGACGCTCGTGAAGCCCACCGCCATGACAG
Seq C2 exon
GGACGCTGCAGGTCCGCCTCCTGGGCTGTGAGCAGCTGCTGATAGCGGTGCCTGGACGTTCCCCCGCGGCCGCGCTGGCCGGGAGCCCCTCCCAAGGCTGGCTTCGGAGCAGAGCCAAGCAGCAGCGTGGGGGAGGCGAGCTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.435 C2=0.060
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(2.7=4.7),PF0218511=HR1=PU(54.2=90.7)
A:
PF0218511=HR1=PD(43.1=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGATGGTAGAGGAGCT
R:
GCTTGGCTCTGCTCCGAAG
Band lengths:
244-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development