RnoEX6016261 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8646030-8648567:+
Coord C1 exon
chr3:8646030-8646157
Coord A exon
chr3:8646320-8646503
Coord C2 exon
chr3:8648458-8648567
Length
184 bp
Sequences
Splice sites
3' ss Seq
TATTTATGTCTCCTCTGTAGGCT
3' ss Score
9.49
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCCCTGACTTGCTGGCAGAGGAGTTGCAGCACCGACTGCGAATAGAGGCTGCTGTGGCTGCAGGTGCCAAGAATGTGGTGAAGCTGCTTGGTGGCCAGAGAATTCAGGACCGCAAGGCACTGGCCGAG
Seq A exon
GCTCAGGCCCAGCTCCAGGAATCCTCCCAGAAGCTGGACCTCCTACGGCTGGCCCTGGAATTGTTACTGGAGAGGTTGCCTCCCACCCACTCTCTTCGCAGCAGGGTGACCCGAGAACTGCGGATGGCCATGCTTGGGAACCCCCAGCCTCTGGGGACACTTGTGAAACCCATTGCCCTGACAG
Seq C2 exon
GTGAAGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCAGACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGGCTTTTAGCATCTCCTTGGACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-'31-25,'31-22,32-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(4.3=4.7),PF0218511=HR1=PU(54.2=90.7)
A:
PF0218511=HR1=PD(43.1=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGCTGGCAGAGGAGTT
R:
TCGGTCCAAGGAGATGCTAAA
Band lengths:
234-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]