GgaEX6015108 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5851853-5853168:+
Coord C1 exon
chr17:5851853-5852004
Coord A exon
chr17:5852376-5852571
Coord C2 exon
chr17:5852977-5853168
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTTCTACTTCATATTGCTAGGCT
3' ss Score
4.29
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGAGACTGGGAACCACCATCAGTGCTGTGGAGCTGCGCATTGAGGAGCTGAGGCATCGTCTGCGCATTGAAGCTGCTGTAGCTGAGGGGGCAAAAAATGTGCTGAAGATCCTAGGAGGGAGTCGGGTACAAGATCGCAAATTTTTGGCTGAG
Seq A exon
GCTCAGGGTCGTTTGCAAGAGTCCTCTCAGAAGATTGACCTGCTGCGCTTGTCCTTGGAATGTCAGCTTAGTGGGCTTTCTCCAGATCACCCGAAACGAGCACTCATCAAGCAGGAATTAGTAAATACCTCTTCCCTGGGAGCACAGCATGGCATTATCCAACCCACTTCAGTCATCAAACCTACAGCCCTTACAG
Seq C2 exon
GAACGTTGGAAGTGAGACTGATGGGGTGTCAGGATCTATTGGAAAATGTTCCTGGCCGTTCCCGAATGGCTGGTTCTTCTCCTGTCTGCGGCAGCCCAAGTGACTTGAAGTCCTTTTCCCTAACAAGAGTTGGCCTGGGTATCCATGGCCGTAGCGTTGCAGGAAAGTACCTGCGAAATGAAGAGCTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0218511=HR1=PU(54.2=76.5)
A:
PF0218511=HR1=PD(43.1=47.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAGGAGCTGAGGCATCG
R:
CCAGGCCAACTCTTGTTAGGG
Band lengths:
253-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]