MmuEX6100182 @ mm10
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30080756-30082962:+
Coord C1 exon
chr2:30080756-30080883
Coord A exon
chr2:30081053-30081236
Coord C2 exon
chr2:30082816-30082962
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTCTCCTTGGTAGGCC
3' ss Score
8.14
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCCCCGACTTGCTGGCAGAGGAGCTGCAGCACCGACTTCGAGTAGAGGCTGCTGTGGCTGCAGGTGCCAAGAATGTGGTGAAGCTGCTTGGTGGCCAGAGGATGCAGGACCGAAAGGCACTGGCCGAG
Seq A exon
GCCCAGGCCCAGCTCCAGGAATCCTCCCAGAAGCTGGACCTCCTACGGCTGGCCCTGGAATTGCTGCTGGAGAGGTTGCCTCCCACCCACTCTCTACGTAGCAGGGTGACCCAAGAACTTTGGATGGCAATGCTTGGGAACCCCCAACCTTTGGGGACACTTGTGAAACCTATTGCCTTGACAG
Seq C2 exon
GGACACTGCAGGTTCGCCTCCTGGGCTGCAAAGATCTGCTGGTAGCTGTGCCTGGACGGTCTCCCATGGCTGTCCTGGCAGGTAGCCCTTCTGAAAGCTGGCTCCGAACAAGGTCCCGGCAGCAGCGTGGTGGAGGCGAACTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785-'9-16,'9-10,14-16=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.038 C2=0.040
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(2.7=4.7),PF0218511=HR1=PU(54.2=90.7)
A:
PF0218511=HR1=PD(43.1=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACTTCGAGTAGAGGCT
R:
CAGTTCGCCTCCACCACG
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types