MmuEX6100182 @ mm9
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:29936276-29938482:+
Coord C1 exon
chr2:29936276-29936403
Coord A exon
chr2:29936573-29936756
Coord C2 exon
chr2:29938336-29938482
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTCTCCTTGGTAGGCC
3' ss Score
8.14
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCCCCGACTTGCTGGCAGAGGAGCTGCAGCACCGACTTCGAGTAGAGGCTGCTGTGGCTGCAGGTGCCAAGAATGTGGTGAAGCTGCTTGGTGGCCAGAGGATGCAGGACCGAAAGGCACTGGCCGAG
Seq A exon
GCCCAGGCCCAGCTCCAGGAATCCTCCCAGAAGCTGGACCTCCTACGGCTGGCCCTGGAATTGCTGCTGGAGAGGTTGCCTCCCACCCACTCTCTACGTAGCAGGGTGACCCAAGAACTTTGGATGGCAATGCTTGGGAACCCCCAACCTTTGGGGACACTTGTGAAACCTATTGCCTTGACAG
Seq C2 exon
GGACACTGCAGGTTCGCCTCCTGGGCTGCAAAGATCTGCTGGTAGCTGTGCCTGGACGGTCTCCCATGGCTGTCCTGGCAGGTAGCCCTTCTGAAAGCTGGCTCCGAACAAGGTCCCGGCAGCAGCGTGGTGGAGGCGAACTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.038 C2=0.040
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(2.7=4.7),PF0218511=HR1=PU(54.2=90.7)
A:
PF0218511=HR1=PD(43.1=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACTTCGAGTAGAGGCT
R:
CAGTTCGCCTCCACCACG
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: