BtaEX0027378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36430358-36444345:+
Coord C1 exon
chr2:36430358-36430456
Coord A exon
chr2:36434403-36434515
Coord C2 exon
chr2:36444176-36444345
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTCCTTGTTTAAGGGA
3' ss Score
10.02
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAGGGACACTGGAAAGTTAAAAATTGCGAAGAAACACTTTTTTACCTTTGTAAGAAAACAGGCCTTGTCCTTTCTGACACTGAATCAGGCTGTCAAAAG
Seq A exon
GGATGGGAGAGACATGGTAAATTCTGTTACAAAATTGACACCGTCCTTCGAAGCTTTGACCATGCCTCCAGTGGTTACTACTGTCCTCCTGCGCTTATAACCATTACAAGCAG
Seq C2 exon
GTTTGAACAGGCTTTTATTACCAGTTTGATCAGTAGTGTGGTAAAAACGAAGGACACTTATTTTTGGATCGCTCTTCAAGATCAAAATAATACAGGAGAATACACTTGGAAGACGGCAGGGCAGCAGTTGGAGCCAGTGAAGTACACACACTGGAACACACGTCAGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'9-14,'9-11,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.5=54.5)
A:
PF0005916=Lectin_C=PU(8.1=21.1)
C2:
PF0005916=Lectin_C=FE(57.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGAAAGTTAAAAATTGCGA
R:
GACGTGTGTTCCAGTGTGTGT
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development