GgaEX0016719 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23429201-23436428:+
Coord C1 exon
chr7:23429201-23429308
Coord A exon
chr7:23434070-23434182
Coord C2 exon
chr7:23436259-23436428
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAATGTTCATTTCTTTTAAGGGA
3' ss Score
6.72
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAGGGACTTTGGAAAGTTAAAAAATGTGAAGACAAATCTTTCTACATTTGTAAAAAGGCAGGAGAATTTAACAGTGTTTCTTCTGATGCAGAATCGAGTTGTCCAGAG
Seq A exon
GGATGGGAAAGACATGGTGGATATTGTTACAAAATCGACAGTACCCCTCGAAGTTTTGAACATGCTTCCAGTGGTTATTTCTGCCCATCGGCACTTGTATCAGTAACAAACAG
Seq C2 exon
GTTTGAGCAAGCTTTTATCACCAGCATGATCCGTAGTGTGGTAAAATCTGAGAGAACTTATTTTTGGATAGGACTGCAAGACCTTAACAACACAGGAGAATACGTTTGGCTAACAAAAGATGGGAAAAATCACTCTGTAAGCTACACAAACTGGAACAAGCATCAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.5=50.0)
A:
PF0005916=Lectin_C=PU(15.0=42.1)
C2:
PF0005916=Lectin_C=FE(53.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTACATTTGTAAAAAGGCAGG
R:
GTGGCTGATGCTTGTTCCAGT
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event