DreEX0006870 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11072861-11076638:+
Coord C1 exon
chr11:11072861-11072961
Coord A exon
chr11:11074746-11074858
Coord C2 exon
chr11:11076469-11076638
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGTATTGTGTGCCTGTGCAGGGC
3' ss Score
8.61
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGTGTTTACGGAAAAAGGCAAAAGCATTTAATATGGTGATTTTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGT
Seq A exon
GGCTGGAGAAGGAAGGACAACTGGTGTTATAAGATCACAGATCAGGAGCAGACATTTCAGGATGCTGTGAAAGGATATTATTGCAAATCACCTCTTGTCACGATAGAAAGCAG
Seq C2 exon
GTTTGAGCAGGCCTTTCTAAAAAGTCTGATCAGTGAAATGGGAGGCTCTGACTCTCAATACTATTGGACAGCTTTACAAGACCTGAACAGAACAGAAGAGTATCGCTGGCTGACTCAGAATGGCTCAACAACACCCCTCACCTACACCAACTGGAATCGACACCAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'12-10,'12-9,13-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005916=Lectin_C=PU(20.2=60.5)
C2:
PF0005916=Lectin_C=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAAAAGGCAAAAGCATT
R:
TTGGTGTAGGTGAGGGGTGTT
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]