HsaEX6016179 @ hg19
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:9042]
Coordinates
chr2:160862163-160873223:-
Coord C1 exon
chr2:160873125-160873223
Coord A exon
chr2:160869774-160869886
Coord C2 exon
chr2:160862163-160862332
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTATTCTTTTTAAGGGA
3' ss Score
10.9
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAGGGACACTGGAAAGTCAAAAATTGTGAAGAAAGACTTTTTTACATTTGTAAAAAAGCAGGCCATGTCCTCTCTGATGCTGAATCAGGATGTCAAGAG
Seq A exon
GGATGGGAGAGACATGGTGGATTCTGTTACAAAATTGACACAGTCCTTCGAAGCTTTGACCAAGCTTCCAGCGGTTATTACTGTCCTCCTGCACTTGTAACCATTACAAACAG
Seq C2 exon
GTTTGAACAGGCTTTTATTACCAGTTTGATCAGTAGTGTGGTAAAAATGAAGGACAGTTATTTTTGGATAGCTCTTCAGGACCAAAATGATACGGGAGAATACACTTGGAAGCCAGTAGGGCAGAAACCCGAGCCGGTGCAGTACACACACTGGAACACACACCAGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.5=54.5)
A:
PF0005916=Lectin_C=PU(11.8=21.1)
C2:
PF0005916=Lectin_C=FE(57.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGACACTGGAAAGTCAAA
R:
TGTTCCAGTGTGTGTACTGCAC
Band lengths:
257-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)