RnoEX6017013 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46544999-46558304:-
Coord C1 exon
chr3:46558206-46558304
Coord A exon
chr3:46554959-46555071
Coord C2 exon
chr3:46544999-46545162
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTTTTCCCCCCAAGGGC
3' ss Score
8.26
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GACGGACGCTGGAAAGTGAAAGGTTGTAAAGAAACACTCCCTTACATTTGTAAGAAAGCAGGACAAGTCCTTGAGGATGAGGACTCCGGATGTCAAGCG
Seq A exon
GGCTGGGAAAGACACGGCAAGTATTGTTACAAAATCGACACAGTCCTGAGAAGCTTTGAGCAGGCTTCCGGTGGTTATTACTGTCCTCCCGCCCTCCTAACCATCACCAGCCG
Seq C2 exon
ATTTGAACAAGCTTTTATTACCAGTTTGATCAGTAGTGTGGCAAGAAAGGACAGTTATTTTTGGATTGCTCTTCAAGACCAAAACAATACAGGAGAATACACTTGGAAGACCATGGGACAGAGGGAGCCGGTGCAGTACACACACTGGAACGCACATCAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'9-13,'9-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.5=54.5)
A:
PF0005916=Lectin_C=PU(10.0=21.1)
C2:
PF0005916=Lectin_C=FE(56.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGACGCTGGAAAGTGAAA
R:
TGTGCGTTCCAGTGTGTGTAC
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]