MmuEX6101523 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60479404-60497658:-
Coord C1 exon
chr2:60497560-60497658
Coord A exon
chr2:60495255-60495367
Coord C2 exon
chr2:60479404-60479567
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTCACCCCCTAAGGGC
3' ss Score
6.99
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GACGGACGCTGGAAAGTGAAAGATTGTAAAGAAAGACTCTTTTATATTTGTAAGAAAGCAGGGCAAGTCCCTGCTGATGAGCAGTCCGGATGTCCAGCG
Seq A exon
GGCTGGGAGAGACACGGCAGATTTTGTTACAAAATCGACACAGTCCTGCGAAGCTTTGAGGAGGCTTCGAGTGGCTATTACTGCTCTCCTGCGCTCCTGACCATCACCAGCCG
Seq C2 exon
ATTTGAACAAGCTTTTATTACCAGTTTGATCAGTAGTGTGGCAGAAAAGGACAGTTATTTTTGGATTGCTCTTCAAGACCAAAACAATACAGGAGAGTACACTTGGAAGACCGTGGGGCAGAGGGAGCCGGTGCAGTACACATACTGGAACACGCGTCAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'16-17,'16-15,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.5=54.5)
A:
PF0005916=Lectin_C=PU(11.0=28.9)
C2:
PF0005916=Lectin_C=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGCTGGAAAGTGAAAGA
R:
GACGCGTGTTCCAGTATGTGT
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types