BtaEX0027379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36425554-36430456:+
Coord C1 exon
chr2:36425554-36425748
Coord A exon
chr2:36426876-36427033
Coord C2 exon
chr2:36430358-36430456
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTACGTTAATCTCTTGCAGAAA
3' ss Score
8.98
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAAGGATGCTTGGAAATACTATGCTACCCACTGTGAGCCTGGCTGGAATCCCCACAACCGTAATTGCTATAAACTGCAGAAAGAAAAAAAGACCTGGAATGAGGCTTTGCAGTCTTGCCAGTCCAACAACAGTGTATTAACAGACATCACTTCGTTAGCAGAGGTGGAGTTTCTTGTAACCCTCCTTGGAGATG
Seq A exon
AAAATGCATCAGAAACATGGATTGGTTTGAGCAGCCATAAAATTCCAGTTTCCTTTGAGTGGTCTAATGGCTCCTCGGTCACCTTTACTAACTGGCACACACTTGAGCCCCACATTTTTCCAAATAGAAGCCAGTTGTGTGTCTCAGCAGAGCAATCT
Seq C2 exon
GAGGGACACTGGAAAGTTAAAAATTGCGAAGAAACACTTTTTTACCTTTGTAAGAAAACAGGCCTTGTCCTTTCTGACACTGAATCAGGCTGTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=56.1)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTACCCACTGTGAGCCT
R:
GTCAGAAAGGACAAGGCCTGT
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development