DreEX6090834 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11063334-11066038:+
Coord C1 exon
chr11:11063334-11063522
Coord A exon
chr11:11065501-11065658
Coord C2 exon
chr11:11065928-11066038
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTATGTTGTTATTATTTCAGAAC
3' ss Score
7.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATAACTGGCAATATAAGGAGACGATTTGTCCTGACGGTTGGCTGGACCACAATGGTTTCTGTTACCTGTACCTGAAGGAGAAGGCGAGCTGGGACAACTCTTCCAGTGCATGCAGAGCTCTTGAGGCAGAGCTGGTCAGCATCCACTCCCTGTCCCAACAGGAAGTACTGCTCAAACTGCTCTCCCTTG
Seq A exon
AACCCAACTCTAAGGTGTGGATCGGTTTGCACAAAGAGGCCACACTTCAAACAGTCCAATGGTCGGACAAATCTCCAGTCAAATTCATATCATGGAACTCACAGGAGCCTACACGTCGATATGATGACAAGCGCATCTGCGTTACCGCAGACCCGAAG
Seq C2 exon
CAAGGCAGATGGCAGTTCGAGGAGTGTGAAGAGCAAAACGCAGCGATTTGTAAAGCATCAGGGCTTGTTCCTCAGCGTCCTGCTGGAGAATGGGATGAAGGATGTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=57.8)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGTCCTGACGGTTGGCT
R:
CTGAGGAACAAGCCCTGATGC
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]