RnoEX0066611 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46558206-46564806:-
Coord C1 exon
chr3:46564612-46564806
Coord A exon
chr3:46562590-46562747
Coord C2 exon
chr3:46558206-46558304
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTGATTTCCTACAGAAA
3' ss Score
9.24
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAAGGACTCCTGGAAATACCATACCACTCACTGTGACCCTGGCTGGACTCCCTTCAATCGTAAATGCTACAAACTTAAGAAAGAGAAAAGGACTTGGCAGGAGGCTCTGCACTCTTGCCAGTCTGATGACAGCATGTTGATGGATGTCACTTCCCTAGCTGAGGTGGAGTTGCTTGTAAACCTCCTTGGGGATG
Seq A exon
AAAATGCATCGGAAACATGGATTGGTTTGAGTAGCAATAAAATTCCAGTTTCCTTCGCATGGTCCAGTGGCTCCTCTGTCATCTTCACTAACTGGTACCTTCTCGAGCCTCGAATTCTTCCAAACAGAAGACAACTGTGTGTCTCAGCAGATCAATCT
Seq C2 exon
GACGGACGCTGGAAAGTGAAAGGTTGTAAAGAAACACTCCCTTACATTTGTAAGAAAGCAGGACAAGTCCTTGAGGATGAGGACTCCGGATGTCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=56.1)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGACTCCCTTCAATC
R:
TGACATCCGGAGTCCTCATCC
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]