MmuEX6101521 @ mm10
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60497560-60504321:-
Coord C1 exon
chr2:60504127-60504321
Coord A exon
chr2:60502039-60502196
Coord C2 exon
chr2:60497560-60497658
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTCTATGTATTTCTTACAGAAA
3' ss Score
9.94
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAAGGACTCCTGGAAATACCATGCCACTCACTGTGATCCTGACTGGACTCCCTTCAATCGTAAATGCTACAAACTTAAGAAAGACAGAAAGAGCTGGCTTGGGGCTCTGCACTCTTGCCAATCGAATGACAGCGTGTTGATGGATGTAGCTTCGTTGGCAGAGGTGGAGTTTCTTGTAAGCCTCCTTAGGGATG
Seq A exon
AAAATGCATCAGAAACGTGGATTGGTTTGAGTAGCAATAAAATCCCAGTCTCCTTTGAGTGGTCCAGTGGCTCCTCTGTCATCTTTACTAACTGGTACCCTCTGGAGCCTCGAATTCTTCCAAACAGAAGACAACTGTGTGTCTCAGCCGAGGAATCT
Seq C2 exon
GACGGACGCTGGAAAGTGAAAGATTGTAAAGAAAGACTCTTTTATATTTGTAAGAAAGCAGGGCAAGTCCCTGCTGATGAGCAGTCCGGATGTCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=56.1)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACTGGACTCCCTTCAA
R:
GGACATCCGGACTGCTCATCA
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types