GgaEX6042626 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23426740-23429308:+
Coord C1 exon
chr7:23426740-23426928
Coord A exon
chr7:23427582-23427739
Coord C2 exon
chr7:23429201-23429308
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATATTTTATTCTTCTACAGAGA
3' ss Score
8.71
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATACGTGGAAGTATTATGCCACTCGTTGTGATGCTGGCTGGTACCCATACAATCGTTACTGCTACAGACTTCATAAAGAGGCGAAGAGCTGGAATGATGCTTTGATCTCATGCCAAAGTGACAACAGCGGGCTCATTAGTATATCCTCCATGGCAGATGCAGAGCTGCTCCATAACTTGCTTCAACGTG
Seq A exon
AGAACATAACTGAAACATGGATTGGATTATACAGTAGTAACATCTCAGTTGTTTTTGAGTGGTCAGACGGCACCCCAGTGAAGTTCTCCTACTGGCACAGCCAAGAACCTAATACCTTTCAAAGAACAGGACAACTGTGTGTTTCAGCACAAGGACCT
Seq C2 exon
GAGGGACTTTGGAAAGTTAAAAAATGTGAAGACAAATCTTTCTACATTTGTAAAAAGGCAGGAGAATTTAACAGTGTTTCTTCTGATGCAGAATCGAGTTGTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=57.8)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTACCCATACAATCGT
R:
GGACAACTCGATTCTGCATCAGA
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]