HsaEX0047993 @ hg38
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:160016614-160022859:-
Coord C1 exon
chr2:160022665-160022859
Coord A exon
chr2:160020106-160020263
Coord C2 exon
chr2:160016614-160016712
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTACATTTATCTCTTACAGAAA
3' ss Score
10.58
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAAAGATGCGTGGAAATATTATGCTACCCACTGTGAGCCTGGCTGGAATCCCTACAATCGTAATTGCTACAAACTTCAGAAAGAAGAAAAGACCTGGCATGAGGCTCTGCGTTCTTGTCAGGCTGATAACAGTGCATTAATAGACATAACCTCATTAGCAGAGGTGGAGTTTCTTGTAACCCTCCTTGGAGATG
Seq A exon
AAAATGCATCAGAAACATGGATTGGTTTGAGCAGCAATAAAATTCCAGTTTCCTTTGAATGGTCTAATGACTCTTCAGTCATCTTTACTAATTGGCACACACTTGAGCCCCACATTTTTCCAAATAGAAGCCAGCTGTGTGTCTCAGCAGAGCAGTCT
Seq C2 exon
GAGGGACACTGGAAAGTCAAAAATTGTGAAGAAAGACTTTTTTACATTTGTAAAAAAGCAGGCCATGTCCTCTCTGATGCTGAATCAGGATGTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(33.9=56.1)
A:
PF0005916=Lectin_C=FE(47.7=100)
C2:
PF0005916=Lectin_C=PD(16.5=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTACCCACTGTGAGCCT
R:
CAGCATCAGAGAGGACATGGC
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development