RnoEX0066610 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46562590-46576104:-
Coord C1 exon
chr3:46575964-46576104
Coord A exon
chr3:46564612-46564806
Coord C2 exon
chr3:46562590-46562747
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTGGTTTATAAAGAAA
3' ss Score
3.44
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGGTCACTGCTGGGCCATTTGTGGAGTATCATTGTGGAACCCTGAAAGTTGCCTCAGCTACCTGGAGAAGCATGGACTGCGAGTCTACCTTGCCTTATATATGCAAACGGCATCTAAACCACACTGCCGAGGACATCCTGC
Seq A exon
AAAAGGACTCCTGGAAATACCATACCACTCACTGTGACCCTGGCTGGACTCCCTTCAATCGTAAATGCTACAAACTTAAGAAAGAGAAAAGGACTTGGCAGGAGGCTCTGCACTCTTGCCAGTCTGATGACAGCATGTTGATGGATGTCACTTCCCTAGCTGAGGTGGAGTTGCTTGTAAACCTCCTTGGGGATG
Seq C2 exon
AAAATGCATCGGAAACATGGATTGGTTTGAGTAGCAATAAAATTCCAGTTTCCTTCGCATGGTCCAGTGGCTCCTCTGTCATCTTCACTAACTGGTACCTTCTCGAGCCTCGAATTCTTCCAAACAGAAGACAACTGTGTGTCTCAGCAGATCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-'5-10,'5-8,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.6=75.0)
A:
PF0005916=Lectin_C=PU(33.9=56.1)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCCATTTGTGGAGTAT
R:
GAGGCTCGAGAAGGTACCAGT
Band lengths:
244-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]