BtaEX6009584 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36416390-36427033:+
Coord C1 exon
chr2:36416390-36416533
Coord A exon
chr2:36425554-36425748
Coord C2 exon
chr2:36426876-36427033
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTGGTTCAAAAAGAAA
3' ss Score
1.83
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAATAAATTTTGAGCCATTTGTTGAATATCACTGTGGAACATTTAATGCATTTATGCCAAAGGCCTGGAAAAGTCGGGATTGTGAGTCTACCTTGCCCTACGTGTGTAAAAAATATCTAAATCCCACTGATCATGGAGTAGTTG
Seq A exon
AAAAGGATGCTTGGAAATACTATGCTACCCACTGTGAGCCTGGCTGGAATCCCCACAACCGTAATTGCTATAAACTGCAGAAAGAAAAAAAGACCTGGAATGAGGCTTTGCAGTCTTGCCAGTCCAACAACAGTGTATTAACAGACATCACTTCGTTAGCAGAGGTGGAGTTTCTTGTAACCCTCCTTGGAGATG
Seq C2 exon
AAAATGCATCAGAAACATGGATTGGTTTGAGCAGCCATAAAATTCCAGTTTCCTTTGAGTGGTCTAATGGCTCCTCGGTCACCTTTACTAACTGGCACACACTTGAGCCCCACATTTTTCCAAATAGAAGCCAGTTGTGTGTCTCAGCAGAGCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515-'6-9,'6-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(34.3=75.5)
A:
PF0005916=Lectin_C=PU(33.9=56.1)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGCCTGGAAAAGTCGG
R:
TGCTCTGCTGAGACACACAAC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]