GgaEX1044165 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23425614-23427739:+
Coord C1 exon
chr7:23425614-23425757
Coord A exon
chr7:23426740-23426928
Coord C2 exon
chr7:23427582-23427739
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTGTATGGTTAACTAAAAGATA
3' ss Score
1.05
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGTTTCTGAGGACCATTCTAGTGAAAATCATTGTGCAGTGATGAGTTCAAAATTGAAATACGGCTGGAAAAGTTACTTATGTGAATCTGGATTGCCTTTTGTATGCAAGAAATATTTAAATAAGATAGAGCAGGAAACACTGG
Seq A exon
ATACGTGGAAGTATTATGCCACTCGTTGTGATGCTGGCTGGTACCCATACAATCGTTACTGCTACAGACTTCATAAAGAGGCGAAGAGCTGGAATGATGCTTTGATCTCATGCCAAAGTGACAACAGCGGGCTCATTAGTATATCCTCCATGGCAGATGCAGAGCTGCTCCATAACTTGCTTCAACGTG
Seq C2 exon
AGAACATAACTGAAACATGGATTGGATTATACAGTAGTAACATCTCAGTTGTTTTTGAGTGGTCAGACGGCACCCCAGTGAAGTTCTCCTACTGGCACAGCCAAGAACCTAATACCTTTCAAAGAACAGGACAACTGTGTGTTTCAGCACAAGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.3=75.5)
A:
PF0005916=Lectin_C=PU(33.9=57.8)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGAGGACCATTCTAGTGA
R:
GCTGTGCCAGTAGGAGAACTT
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]