DreEX6090835 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11058646-11065658:+
Coord C1 exon
chr11:11058646-11058792
Coord A exon
chr11:11063334-11063522
Coord C2 exon
chr11:11065501-11065658
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTATTTATCTGCAAGATA
3' ss Score
3.67
5' ss Seq
TTGGTTAGC
5' ss Score
0.92
Exon sequences
Seq C1 exon
ATCTGAGCTCCACACCAGTGCAGCAGAACCAGCAGTGTGGGCTGTTTAACTCCACTCTCGGCTCCTGGCAGAGTCTGTCCTGTGAGTCAGCCCTGCCTTACATCTGCAAGAAAACCACCAACTACAGCCGGAATGCCGAGCCGCTTG
Seq A exon
ATAACTGGCAATATAAGGAGACGATTTGTCCTGACGGTTGGCTGGACCACAATGGTTTCTGTTACCTGTACCTGAAGGAGAAGGCGAGCTGGGACAACTCTTCCAGTGCATGCAGAGCTCTTGAGGCAGAGCTGGTCAGCATCCACTCCCTGTCCCAACAGGAAGTACTGCTCAAACTGCTCTCCCTTG
Seq C2 exon
AACCCAACTCTAAGGTGTGGATCGGTTTGCACAAAGAGGCCACACTTCAAACAGTCCAATGGTCGGACAAATCTCCAGTCAAATTCATATCATGGAACTCACAGGAGCCTACACGTCGATATGATGACAAGCGCATCTGCGTTACCGCAGACCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'6-7,'6-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(34.3=74.0)
A:
PF0005916=Lectin_C=PU(33.9=57.8)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGAGCTCCACACCAGTGC
R:
AGGCTCCTGTGAGTTCCATGA
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]