GgaEX1044165 @ galGal4
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21337040-21339165:+
Coord C1 exon
chr7:21337040-21337183
Coord A exon
chr7:21338166-21338354
Coord C2 exon
chr7:21339008-21339165
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTGTATGGTTAACTAAAAGATA
3' ss Score
1.05
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGTTTCTGAGGACCATTCTAGTGAAAATCATTGTGCAGTGATGAGTTCAAAATTGAAATACGGCTGGAAAAGTTACTTATGTGAATCTGGATTGCCTTTTGTATGCAAGAAATATTTAAATAAGATAGAGCAGGAAACACTGG
Seq A exon
ATACGTGGAAGTATTATGCCACTCGTTGTGATGCTGGCTGGTACCCATACAATCGTTACTGCTACAGACTTCATAAAGAGGCGAAGAGCTGGAATGATGCTTTGATCTCATGCCAAAGTGACAACAGCGGGCTCATTAGTATATCCTCCATGGCAGATGCAGAGCTGCTCCATAACTTGCTTCAACGTG
Seq C2 exon
AGAACATAACTGAAACATGGATTGGATTATACAGTAGTAACATCTCAGTTGTTTTTGAGTGGTCAGACGGCACCCCAGTGAAGTTCTCCTACTGGCACAGCCAAGAACCTAATACCTTTCAAAGAACAGGACAACTGTGTGTTTCAGCACAAGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'7-8,'7-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.3=75.5)
A:
PF0005916=Lectin_C=PU(33.9=57.8)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGAGGACCATTCTAGTGA
R:
GCTGTGCCAGTAGGAGAACTT
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]