MmuEX6101520 @ mm9
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60340096-60353103:-
Coord C1 exon
chr2:60352963-60353103
Coord A exon
chr2:60342184-60342378
Coord C2 exon
chr2:60340096-60340253
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTGATTTATAAAGAAA
3' ss Score
2.87
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGATAACTCCTGGGCCATTTGTTGAGCATCACTGTGGAACCCTGGAGGTTGTTTCAGCTGCCTGGAGGAGCAGGGACTGCGAGTCCACCTTGCCTTATATATGCAAACGGGATCTAAACCACACTGCGCAGGGAATCCTGG
Seq A exon
AAAAGGACTCCTGGAAATACCATGCCACTCACTGTGATCCTGACTGGACTCCCTTCAATCGTAAATGCTACAAACTTAAGAAAGACAGAAAGAGCTGGCTTGGGGCTCTGCACTCTTGCCAATCGAATGACAGCGTGTTGATGGATGTAGCTTCGTTGGCAGAGGTGGAGTTTCTTGTAAGCCTCCTTAGGGATG
Seq C2 exon
AAAATGCATCAGAAACGTGGATTGGTTTGAGTAGCAATAAAATCCCAGTCTCCTTTGAGTGGTCCAGTGGCTCCTCTGTCATCTTTACTAACTGGTACCCTCTGGAGCCTCGAATTCTTCCAAACAGAAGACAACTGTGTGTCTCAGCCGAGGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(33.6=75.0)
A:
PF0005916=Lectin_C=PU(33.9=56.1)
C2:
PF0005916=Lectin_C=FE(47.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCATTTGTTGAGCATCA
R:
ATTCGAGGCTCCAGAGGGTAC
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: