BtaEX0027491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2066312-2066868:+
Coord C1 exon
chr14:2066312-2066373
Coord A exon
chr14:2066680-2066694
Coord C2 exon
chr14:2066779-2066868
Length
15 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCTGGTCTCTCTAGCAC
3' ss Score
8.42
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGAGCGGGACCGTGTGCAGAAGAAAACCTTCACCAAGTGGGTCAATAAGCACCTCATCAAG
Seq A exon
CACTGGAGGGCAGAG
Seq C2 exon
GCTCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTCTTGGAGGTGCTCTCTGGGGACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.9=61.9)
A:
PF0030726=CH=FE(3.8=100)
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
ENSBTAT00000015828fB5304
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCGTGTGCAGAAGAAAA
R:
GGAGATGAGGTTGTGGCCATC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development