RnoEX0066894 @ rn6
Exon Skipping
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117253419-117253879:-
Coord C1 exon
chr7:117253818-117253879
Coord A exon
chr7:117253619-117253633
Coord C2 exon
chr7:117253419-117253508
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCATGGGCTCTGCTGTAGCAC
3' ss Score
4.7
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGAACGAGACCGTGTGCAGAAGAAAACTTTCACCAAGTGGGTCAATAAACACCTTATCAAG
Seq A exon
CACTGGAGGGCAGAG
Seq C2 exon
GCTCAAAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTGCTGGAAGTCCTCTCAGGAGACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781-'12-18,'12-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.9=61.9)
A:
PF0030726=CH=FE(3.8=100)
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
ENSRNOT00000006311fB10872
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACCGTGTGCAGAAGAAA
R:
GGAGATGAGGTTGTGGCCATC
Band lengths:
117-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]