DreEX0056137 @ danRer10
Exon Skipping
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22882039-22891073:-
Coord C1 exon
chr19:22891012-22891073
Coord A exon
chr19:22883798-22883812
Coord C2 exon
chr19:22882039-22882128
Length
15 bp
Sequences
Splice sites
3' ss Seq
CCATCATCTCTCTCTGTCAGCAC
3' ss Score
7.13
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGAACGGGATCGAGTACAGAAAAAGACCTTTACAAAATGGGTGAACAAGCATCTGGTTAAG
Seq A exon
CACTGGAAGGCAGAG
Seq C2 exon
GCTCAGCGGCACATCACAGACCTGTACGAGGATCTCAGAGATGGACACAACCTCATCTCGCTGCTGGAGGTGCTGTCCGGAGAGACACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.9=61.9)
A:
PF0030726=CH=FE(3.8=100)
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
ENSDART00000090669fB4716
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGAACAAGCATCTGGTT
R:
AAGTGTCTCTCCGGACAGCAC
Band lengths:
114-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]