MmuEX0035673 @ mm9
Exon Skipping
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76024771-76025242:-
Coord C1 exon
chr15:76025181-76025242
Coord A exon
chr15:76024989-76025003
Coord C2 exon
chr15:76024771-76024860
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTCTCATGGCTCTGCTGTAGCAC
3' ss Score
5.56
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGAACGAGACCGTGTGCAGAAGAAAACTTTCACCAAGTGGGTCAACAAACACCTTATCAAG
Seq A exon
CACTGGAGGGCAGAG
Seq C2 exon
GCTCAGAGGCACATCAGTGACCTGTACGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTGCTGGAAGTCCTCTCAGGAGACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.9=61.9)
A:
PF0030726=CH=FE(12.5=100)
C2:
PF0030726=CH=FE(28.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACCGTGTGCAGAAGAAA
R:
GGAGATGAGGTTGTGGCCATC
Band lengths:
117-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types