HsaEX0048202 @ hg19
Exon Skipping
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145012319-145012860:-
Coord C1 exon
chr8:145012799-145012860
Coord A exon
chr8:145012569-145012583
Coord C2 exon
chr8:145012319-145012408
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGTCTCTCCTTGCAGCAC
3' ss Score
11.41
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGAGCGGGATCGTGTGCAGAAGAAAACCTTCACCAAGTGGGTCAACAAGCACCTCATCAAG
Seq A exon
CACTGGCGGGCAGAG
Seq C2 exon
GCCCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGCGATGGCCACAACCTCATCTCCCTGCTGGAGGTCCTCTCGGGGGACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.9=61.9)
A:
PF0030726=CH=FE(3.4=100)
C2:
PF0030726=CH=FE(28.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATCGTGTGCAGAAGAAA
R:
GAGATGAGGTTGTGGCCATCG
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)