BtaEX0027583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45761508-45767382:-
Coord C1 exon
chr19:45767335-45767382
Coord A exon
chr19:45763866-45764113
Coord C2 exon
chr19:45761508-45762134
Length
248 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTGGCACCACCCAGGTC
3' ss Score
5.31
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ATGCTCTCAGGGGTGGAGAATGGACTGGACCCCCGGGCTGCCATCCCG
Seq A exon
GTCATCAAGAAGAAGCTAGTGGGCTCCGTGAAGGCGCTGCAGAAGCAGTATGTGTCCTCAGACACGGTGGTCACGAGCGAAGATGGAGATGCCAACACCATGTGCAGCGCCCTGGAGGCCGTCTTCATCCACGGCCTGCACGCCAAGCACATCCGCGCCGAGGCCGGAGGGAAGAGGAAAAAAGGCGCCCACCAGAAGCCTCTGCCTCAGCCCGTCTTCTGGCCTCTCCTGAAAGCTGTCACCCACAA
Seq C2 exon
ACACATCATCTCGGAGTTGGAGCACCTGATCTTTGTGAGCACGGACGTGGGCCGCTGCCGGGCCTGGCTGCGGCTGGCCCTCAACGACGGCCTGATGGAGTGCTACCTGAAGCTGCTGCTACAGGAGAAGGCCCGCCTGTGCGAGTACTACCAGCCCACGGCCCTGCTCCGCGACGCCGAGGAGGGCGAGTTCCTCCTGAGCTTCCTTCAGGGCCTGACGTCCCTATCCTTTGAGCTCTCCTACAAGTCTGCCATCCTTAACGAGTGGACGCTCACCCCGCTGGCCCTCTCGGGGCTCTGCCCGCTCTCAGAGCTCGACCCCCTCACTATCCCTGGAGCTCAACTGCAGCGGAAGGAGTCTCTGGACTCCATCTCCCATTCCTCGGGCTCAGAGGACATCGAGGTCCAGCACTCAGGCCACAAGATCCGACGGAACCGGCAGCTCACCGCCTCCTCCCTCAGCCTGGACACGGCCAGTTCATCCCAGCTCTCCTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
PF0275914=RUN=PU(37.3=60.2)
C2:
PF0275914=RUN=PD(61.9=39.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGGTGGAGAATGGACT
R:
TGGCAGACTTGTAGGAGAGCT
Band lengths:
297-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development