MmuEX6090284 @ mm10
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103394688-103403910:-
Coord C1 exon
chr11:103403825-103403910
Coord A exon
chr11:103397027-103397274
Coord C2 exon
chr11:103394688-103395314
Length
248 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTAACACAACTTAGGTC
3' ss Score
4.37
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTCATGTGAGTCTCCCTCAGAGCTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGTGCTGCCATCCAG
Seq A exon
GTCATCAAGAAGAAGCTCGTGGGATCCGTGAAGGCTCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCCAACACCATGTGCAGTGCCCTGGAGGCTGTGTTCATCCACGGCCTGCATGCCAAGCACATCCGCGCCGAGGCTGGCGGCAAAAGGAAGAAGCACACTCACCAGAAGGCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCCATCACCCACAG
Seq C2 exon
ACACATTGTCTCAGATTTGGAGCACCTGGTCTTCATCAACACAGATGTAGGCCGTTGCCGAGCCTGGCTGCGGTTGGCCCTCAATGACGGTCTGATGGAGTGCTATCTGAAACTGCTCCTGCAGGAACCTGCACGGTTGTGCGAGTACTATCAGCCCACAGCCCTGCTTCGAGATGCCGAGGAGGCTGAGTTCCTCCTGAGCTTCCTGCAAGGACTAACATCCTTGTCCTTCGAACTCTCCTACAAGTCAGCCATCTTAAATGAATGGACACTCACCCCATTGTCGCTCTCTGGGCTTTGCCCCCTCTCTGAACTCGACCCTCTCACTACCTCTGGTGCAGAACTACAGCGGAAAGAGTCTCTGGATTCAATTTCCCATTCCTCGGGCTCTGAGGACATCGAAGTCCAACACTCAGGCCATAAGATCCGCAGGAACAGGAAGCTCACTGCCTCTTCCCTCAGCCTGGACACAGCCAGTTCATCCCAGCTGTCCTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.193 C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
PF0275914=RUN=PU(37.3=60.2)
C2:
PF0275914=RUN=PD(61.9=39.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGTGGAAATGCTCTCAG
R:
AGGAGAGTTCGAAGGACAAGGA
Band lengths:
298-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types