GgaEX1044495 @ galGal3
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
NA
Coordinates
chr27:1500487-1503256:-
Coord C1 exon
chr27:1503179-1503256
Coord A exon
chr27:1501820-1502067
Coord C2 exon
chr27:1500487-1501110
Length
248 bp
Sequences
Splice sites
3' ss Seq
CTGCACCTCCCTGTCTGCAGCTG
3' ss Score
8.94
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
Exon sequences
Seq C1 exon
GGTGACATGTGACCGCGGGTGGGAGCAGCAGCTGAGATGCATTCGAGCCACGCCGATGACCCCAAGGAAGTCATCCAG
Seq A exon
CTGATCAAGAAGCAGCTGGTGAGCTCCATCAAGGCCCTGCAGAAGCAGTACGTCTCCTCGGATGCGGTGGTGACCAGCGATGATGGGAACGCCAACACGCTGTGCTGTGCCCTGGAGGCCGTCTTTGTGCACGGGCTGAAGGCGAAGCACATCAGGACGGAGGCGGGGGGCAAAGGGAGGAAAGCAGGCGGCCGGCTGCCCCTCCCCCAGCCCGTCTTCTGGGCCCTGCTGAAGGGCATCACACACCG
Seq C2 exon
GAACATCATCTCGGAGCTGGAACAACTCATTTTCATCACCACGGACGTGGGCCGCTGCCGGGCCTGGCTGAGGCTGGCTCTGAACGATGGGTTGGTGGAGTGCTACCTGAAGCTGCTGCTGCGCGAGCGCTCCCGCCTGCCCGAGTTCTACCAACCCACAGCGCTGCTCCTGGACGCCGAGGAGTGTGAATTCCTCCTGAGCTACCTGCAGGGCTTGTCGTCCCTCACCTTCCAGCTGTCCTACAAGTCGGCGGTGCTCAACGAGTGGACGGTCACCCCGCTGTCCCTCTCAGGGCTGTGCCCCGTATCCGAGCTGCTGGAGCCCCCGGCGGCCGAACCTCAAAGAAAAGCGTCTCTGGGTTCCATCTCCCAATCTTCGGGCTCTGATGAGATTGAAATCCAACCCCCGGCGCTGCCCATCTGCAAGGCGGGCGACAAACCCAAGCGGACGTCGTCCTCGCTGAGCCTGAACACCACGGGTTCGTCACAGCTGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.012 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
PF0275914=RUN=PU(37.3=60.2)
C2:
PF0275914=RUN=PD(61.9=39.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTGAGATGCATTCGA
R:
CCGACTTGTAGGACAGCTGGA
Band lengths:
304-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]