RnoEX0067112 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91483984-91492591:-
Coord C1 exon
chr10:91492506-91492591
Coord A exon
chr10:91486182-91486429
Coord C2 exon
chr10:91483984-91484610
Length
248 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGACACAACTTAGGTC
3' ss Score
4.59
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTGTCATGTGAGTCTCCTTGAGAACTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGGGCTGCCATCCAG
Seq A exon
GTCATCAAGAAGAAGCTAGTGGGATCTGTGAAGGCCCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCTAACACCATGTGCAGTGCCCTGGAGGCCGTGTTCATCCATGGCTTGCATGCCAAGTACATCCGTGCTGAGGCTGGCGGCAAAAGGAAGAAGCACACTCATCAGAAGCCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCTGTCACCCACAA
Seq C2 exon
ACACATTATCTCAGACTTGGAGCACCTGGTCTTCATCAATACAGACGTAGGCCGCTGCCGGGCCTGGCTGCGGTTGGCCCTCAATGATGGGCTGATGGAGTGCTACCTGAAGTTGCTCCTGCAGGAACCTGCACGGTTGTGCGAGTACTATCAGCCCACGGCCCTGCTTCGAGATGCTGAGGAAGCCGAGTTCCTCCTGAGCTTCCTCCAAGGACTAACATCCTTGTCTTTTGAACTCTCCTACAAGTCAGCCATCTTAAATGAATGGACACTCACCCCACTGTCTCTCTCTGGGCTTTGCCCCCTCTCTGAACTGGACCCTCTCACTGTCTCTGGTGCAGAACTGCAACGGAAGGAGTCTCTGGATTCCATTTCCCATTCCTCAGGCTCTGAGGACATCGAAGTCCAACACTCAGGCCATAAGATCCGCAGGGACAGGAAGCTCACCGCCTCTTCCCTCAGCCTGGACACAGCCAGCTCATCCCAGCTATCCTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
PF0275914=RUN=PU(37.3=60.2)
C2:
PF0275914=RUN=PD(61.9=39.5)
Main Skipping Isoform:
ENSRNOT00000037147fB10911
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGTCTCCTTGAGAACTGC
R:
CTTGGAGGAAGCTCAGGAGGA
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]